How to Migrate from Screaming Frog to Search Atlas: Step-by-Step Guide

Screaming Frog provides strong technical SEO insights by crawling sites, flagging broken links, and identifying...

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Screaming Frog provides strong technical SEO insights by crawling sites, flagging broken links, and identifying duplicate content in real time. However, as a desktop tool, it struggles to scale for large sites or teams, and its interface feels heavy for new users.

Search Atlas simplifies this process. 

It runs cloud-based crawls, integrates directly with Google Search Console, and turns crawl data into clear action items. The platform combines technical SEO, internal linking, schema markup, and AI-driven recommendations in one place.

This guide walks you through setting up Search Atlas, importing your Screaming Frog crawl data, and activating OTTO SEO to automate all your SEO tasks.

1. What Is the Initial Setup in Search Atlas?

Start by configuring your workspace properly to enable seamless tracking, automation, and performance insights.

Create a New Project:

Log in to your Search Atlas account, scroll down in the main Dashboard, and click + Create new.

search atlas Create a New Project step 1

Enter your domain, select the target country, and optionally enter primary keywords for tracking.

search atlas Create a New Project step 2

Add or remove recommended keywords and also add your main competitors. You will be able to change both of these options later.

search atlas Create a New Project step 3

Connect Key Integrations

Google Search Console (GSC)

Click on Site Metrics > All Sites > Connect GSC Account.

search atlas Connect GSC Account step 1

Authorize access and connect your verified property.

After GSC is connected, go to Manage Sites.

search atlas Connect GSC Account step 2 manage sites

A slider will appear showing all imported GSC properties (they are disabled by default). Find your domain and then click Enable.

search atlas Connect GSC Account step 3 activate sites

Google Analytics 4 (GA4)

From your GSC Performance dashboard, click on Connect Google Analytics 4.

search atlas Connect google analytics step 1

Select your GA property or connect your GA4 account. Authorize access and connect your verified property.

search atlas Connect google analytics step 2

Once enabled, Search Atlas will link keyword data, impressions, CTR, and engagement metrics automatically.

You can use publicly shareable links for fast access to verification if needed.

2. How to Export Site Audit Data from Screaming Frog and Import to Search Atlas?

Search Atlas does not require you to import health scan data from Screaming Frog.

It automatically performs fresh technical scans with actionable insights using the Site Auditor.

Export from Screaming Frog

To export your crawl data from Screaming Frog, first complete a successful crawl of the site.

Click Export in the top-left corner to export data from the current tab or filter view. Only the visible or filtered results will be exported.

To export data in bulk, click Bulk Export.

Choose the dataset you want to export, such as:

  • All inlinks
  • All outlinks
  • Images missing alt text
  • Near-duplicate pages

To export all datasets, select Bulk Export > Multi-Export.

Select CSV or Excel format and save the file.

Set Up Site Audit in Search Atlas

Go OTTO & Audit > All Audits > Site Auditor.

Set Up Site Audit in Search Atlas step 1

Enter your domain and configure the crawling features:

Configure crawling with the following options:

  • User agent (use Searchatlas bot recommends for best accuracy)
  • Number of pages to crawl (default is 100)
  • Adjust crawl speed (default is 20 pages per second)
  • Set crawl frequency (default is every 7 days)
Set Up Site Audit in Search Atlas step 2

Run a full scan to launch the crawl across all pages under that domain.

Pro Plan Feature – Bulk Auditing:

For agencies or multi-site audits, go to Update Sites in Bulk and paste multiple domains to queue audits simultaneously.

This is ideal for auditing multiple projects quickly.

search atlas Update Sites in Bulk

3. How to Export Reports from Screaming Frog and Set Up Reports in Search Atlas?

There is no direct way to import reports from Screaming Frog into Search Atlas. However, creating equivalent reports in Search Atlas is fast and intuitive using the Report Builder.

From Screaming Frog

Navigate to Reports in the top menu, choose the desired report category (All Redirects, Redirects, Redirect Chains), then save in CSV format.

Save them for future reference or comparison if you’ve created custom report templates.

In Search Atlas

Go to Report Builder > Report List

search atlas set up report Builder step 1

Choose the location, date range, and the widgets you want to report, like:

  • AI Summaries
  • Site Explorer
  • OTTO SEO
  • Orders & Tasks
  • Google Analytics data
  • Google Search Console data
  • Facebook Ads
  • Google Ads
  • Google Business Profile
  • Keyword Rank Tracking

Next, schedule the automated reporting by adding recipients, selecting the email frequency (weekly, monthly, or quarterly), and choosing what day of the week the report will be sent.

search atlas set up report Builder step 2

Choose between Default Layout and Custom Layout, and create the report.

Customize the Reporting

After creating the report, click Configure Report to change the Integrations, Scheduled emails, and Layout.

In Layout you can fully customize the report.

choosing the report layout through SA report builder

Click Add custom text to add your own text or HTML, enabling you to add your branding like logo, banner, and even links.

add custom text or html search atlas set up report Builder step 5

Scroll down and click and drag each metric to the report. You are free to choose any place to add the report.

customize report search atlas set up report Builder step 6

Add the AI Summaries

In the Integrations, you can add the AI Summary Overview.

These are automated overviews that quickly highlight the key points of your report, making it much easier for both you and your clients to understand the results.

search atlas reporting ai summary overviews local seo

Creating a Local SEO Report

Click on Configure Report and navigate to the Local SEO and GBP Section. Integrate as many Local SEO projects and GBP Accounts as necessary for the report.

Creating a Local SEO Report step 1

The previously configured heatmap for each Local SEO project will be automatically added to the report. They are fully customizable.

Creating a Local SEO Report step 2

The GBP data will be automatically added to the report. Each metric is fully customizable.

Creating a Local SEO Report step 3

Sharing the Report

After configuring your report, download the report as a .PDF, or share via Share URL or Get iFrame Code.

IFrame Code is an HTML element that allows you to embed another HTML page within your own.

search atlas download or share report

White Label Reporting

Search Atlas enables you to completely white-label your dashboard and URL.

Go to Agency White Label and set your custom dashboard URL and logo.

agency hub search atlas activate white label SEO

When you share your report via Shareable URL, it will display your logo and URL.

4. How to Enable Automated SEO Optimization in Search Atlas?

Screaming Frog doesn’t offer an AI SEO agent.

With Search Atlas, you can set up OTTO SEO, the AI agent that automates nearly every SEO task, including technical audits, on-page optimization, link building, content creation and optimization, Local SEO and GBP optimization, and more.

Obs: It’s necessary to go through the Site Audit on your project before activating OTTO.

Go to Projects > + Add a Website

search atlas set up OTTO step 1

Select one of your projects that doesn’t have OTTO installed, or add a new website.

search atlas set up OTTO step 2

Select the GSC and GBP, and add the details about your business.

search atlas set up OTTO step 3

Next, proceed with the tutorial to install OTTO.

search atlas set up OTTO step 4

Installing OTTO on another CMS

Go to OTTO & Projects > Installation Guide. You will find short tutorial for:

  • Google Tag Manager
  • WordPress
  • Shopify
  • Webflow
  • Squarespace
  • ClickFunnels
  • Wix
  • GoHighLevel (GHL)
  • Custom Installation
search atlas OTTO installation guide

Here is a quick recap on how to install OTTO SEO on WordPress.

Go to your WordPress dashboard. Open the Plugins section. Search for “Search Atlas” in the plugin directory. Click Install Now, then activate the plugin.

otto installation wordpress step1

Copy the API key provided during setup. Open the Search Atlas plugin settings by clicking the Search Atlas logo in the left-hand menu. Navigate to General Settings. Paste the API key into the SearchAtlas API Key field and continue.

otto instalation wordpress step 3

Copy the code provided in the next step. Return to your WordPress dashboard. Access the plugin settings again. In General Settings, check the Enable OTTO box. Paste the code into the OTTO Pixel UUID field. Save changes.

otto instalation wordpress step 5

OTTO SEO now runs inside WordPress, automating fixes and SEO updates across your site.

How to Configure OTTO SEO?

Here is a quick tutorial on how to configure OTTO Autopilot and settings.

https://youtu.be/Y9QX7fcfXt0?list=PL9hE8uoCU1bJTAYM1pTd09DyFOPo62aZN

5. How to Leverage Search Atlas Onboarding Process?

Search Atlas offers multiple support channels to help you with any question or issue. Here is how to make the most of our onboarding process.

Watch Tutorial Videos

Search Atlas offers step-by-step tutorials on YouTube to help you set up reports, dashboards, and automations.

Book a 1:1 Onboarding Session

During your trial, you can schedule a 1:1 onboarding session directly from the dashboard. A product expert will help you customize your setup, connect integrations, and configure OTTO SEO for automation.

Follow the 7-Day Email Campaign

As soon as you start your free trial, you’ll receive a 7-day onboarding email sequence. Each email walks you through a core feature.

Technical Documentation

Access full technical docs via the Help Center for detailed instructions on using every tool. Everything is searchable and regularly updated.

Join Our Community of SEO Experts Today!

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